PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G136300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 490aa    MW: 52766.8 Da    PI: 7.8244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G136300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.37.4e-15279363555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC.....................................TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkas..................................kapskKlsKaeiLekAveYIksLq 55 
                         hn+ Er+RRd+iN+++ +L++l+P++s                                  + +s+  +Ka++L +++eY+k+Lq
  Prupe.2G136300.1.p 279 HNQSERKRRDKINQRMKTLQKLVPNSSkggcmfkasdkikshfqgkigqqvvrygdncllpHKSSQVTDKASMLDEVIEYLKNLQ 363
                         9************************888********************************6666666*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.2E-16272303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.97274362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.14E-15277302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-12279363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-11279367No hitNo description
SMARTSM003532.7E-13280368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.14E-15339382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-16342373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MNQCVPSWDL DDISTPPAPR LSLRSSTPSA DVPMLDYEVA ELTWENGQVA MHGLGLPRPP  60
AKPSLTTAKY TTWDKPRASG TLESIVNQAT STLPLPSKPP FDSSGGGSNG ELVSWFDHHR  120
AAAVRSTEVT PSTTMTMDAL VPCRNQSDNS SSHMMESMSM PVVISGSDVV GCSTGVESCS  180
GATGAATQDD DTMLSGKHGS LSRVPETPEW SSRSQSVSGS ATFGMDSHPV TLDSTKASDH  240
DSVCHSRPQR EAGDEDDRKK RSTGKSSVST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL  300
VPNSSKGGCM FKASDKIKSH FQGKIGQQVV RYGDNCLLPH KSSQVTDKAS MLDEVIEYLK  360
NLQAQIQMIS RMNMPAMMLP MAMQQQLQMS MMAAAPRNMG MGMGMGMDMN TMVRPNIPGI  420
SPVLHPAAFM PMASWDGSGG DRSASATVMP DPLSAFLACQ SQPMTMDAYS MMAAMYQQFH  480
QPPASSSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282287ERKRRD
2283288RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894230.0KP689423.1 Prunus pseudocerasus isolate Unigene11342 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217992.10.0hypothetical protein PRUPE_ppa005629mg
TrEMBLM5X1360.0M5X136_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s14430.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-93bHLH family protein